FAQ: Glass Bottom Culture Dishes

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Dish Utilization

Q-DU1 Dish utilization How are glass bottom dishes typically used?

Q-DU2 Which dish to use What type of glass bottom dish should I use to grow my cells?

Q-DU3 Search for published methods How can I search for published methods utilizing MatTek's glass bottom dishes?

Q-DU4 Improved cell growth What should I do if my cells won't grow or if I want to improve growth in the glass bottom dishes?

Q-DU5 Coverslip removal Can the coverslip be removed from the glass bottom dish?

Q-DU6 Temperature control How can I control the temperature of the glass bottom dishes for in situ (live) microscopy?

Q-DU7 Fluorescence microscopy Are the glass bottom dishes good for fluorescence microscopy?

Q-DU8 DIC/Nomarski How can I use the glass bottom dishes for Nomarski Differential Interference Contrast (DIC) microscopy?

Q-DU9 Gridded coverslips Why would one want to use glass bottom dishes containing gridded coverslips? What is the size of the grid?

Q-DU10 Microinjection Why are the 50 mm glass bottom dishes useful for microinjection and maintaining a constant atmosphere in the dish?

Q-DU11 Perfusion How can I perfuse the cells growing in the glass bottom dishes?

Q-DU12 Tissue Slices How can I use the glass bottom dishes to look at tissue slices?

     
Q-DU13 Dish Re-Use Can the glass bottom dishes be re-used?

     
Q-DU14 High Tolerance Coverslips How do the high tolerance P35G-0.17-14-C dishes differ from the standard P35G-1.5-14-C? For what applications would the P35G-0.17-14-C be useful?

Dish Properties

Q-DP1 Adhesive What is the adhesive used to attach the coverslips to the petri dishes?

Q-DP2 Dish Shelf life How long can the dishes be stored?

Q-DP3 Temperature range Over what temperature range can the glass bottom dishes be used?

Q-DP4 Glass properties What are properties of the glass used in the glass bottom dishes? What are the thicknesses of the different coverslips used in the glass bottom dishes?

Q-DP5 Well depth How deep is the well of the glass bottom dish?

Q-DP6 Chemical compatibility What is the chemical compatibility of Glass Bottom Dishes and Multi-Well Plates? Can they be used with organic solvents?

     
Q-DP7 Sterility How do I know that the glass bottom dishes are sterile?


Coatings

Q-DC1 Poly-d-lysine Molecular weight What is the molecular weight range of the poly-d-lysine used to coat the PDL coated glass bottom dishes?

Q-DC2 Why poly-d-lysine? Why are the dishes coated with poly-d-lysine (instead of poly-l-lysine)?

Q-DC3 Collagen type What type of collagen is applied to the collagen coated glass bottom dishes (part #: P35GCol-x-xx-C or P50GCol-x-xx-F)?

Q-DC4 Optical properties Are the poly-lysine or collagen coatings going to affect the optical properties of the glass bottom dishes?


Special Orders

Q-SO1 Alternative diameters Other than the standard 10mm and 14mm hole sizes, do the glass bottom dishes come with any alternative hole diameters?



A-DU1

How are glass bottom dishes typically used?

MatTek's glass bottom dishes come uncoated or coated with poly-d-Lysine or collagen. All dishes are gamma irradiated so all dishes must be handled in a sterile environment to prevent contamination.

A general procedure for their use follows.

1. Maintain sterility: Open dishes in a sterile environment (e.g. laminar flow hood).

2. Pre-equilibrate dishes: Incubate the dishes with culture medium. Pipet 2-3 ml of medium into the 35 mm dishes or 3-4 ml into the 50 mm dishes and incubate at 37° C for 15 minutes.

3. Add cell suspension to microwell: Remove the culture medium by aspiration and plate cells onto the glass surface. Pipet 250µl of the cell suspension (cells suspended in culture medium) into the 10 mm diameter microwells or 500µl of cell suspension into the 14-mm microwells. Incubate the dishes for 1 hour at 37° C.

4. Add additional medium: After 1 hour, gently fill the remainder of the dish with medium Add 2-3 ml to the 35 mm dishes or 3-4 ml for the 50 mm dishes. Note: After the initial one hour period to allow cells to attach to the glass surface, it is important to fill the dish to normal levels in order to minimize the effects of evaporation and to avoid inducing changes in osmolarity.

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A-DU2

What type of glass bottom dish should I use to grow my cells?

It is hard to predict which type of glass bottom dishes (uncoated, poly-d-lysine coated, or collagen coated) will work best with your specific cell type. Many transformed or cancerous cell lines will grow on uncoated dishes. Poly-lysine coated dishes work well for neuronal culture and for many primary cells; other cells prefer a collagen coating. Also, many researchers purchase our uncoated dishes and apply their own specialized coating. You can also Google search for published methods utilizing glass bottom dishes and your cells (see below).

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A-DU3

How can I search for published methods utilizing MatTek's glass bottom dishes?

We have collected and catalogued hundreds of technical papers that cite the use of our Glass Bottom Culture Dishes. You can search our database of cataloged publications right here on our website.

Note: If the exact glass bottom dish part number is unspecified in a literature article, it is safe to assume that uncoated dishes were used (e.g., P35G-0-14-C, P35-1.5-14-C, etc.)

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A-DU4

What should I do if my cells won't grow or if I want to improve growth in the glass bottom dishes?

A: Although our poly-d-lysine or collagen coating works well for the vast majority of customers, some customers find it necessary to coat the glass bottom dishes themselves. They purchase the uncoated dishes and use the following HCl pretreatment along with their coating of choice.

1. Under sterile conditions, pipette 250µl of 1 N HCl onto non-coated 10-mm glass bottom dishes (P35G-x-10-C or P50G-x-10-F); or pipette 500µl of 1 N HCl into the 14-mm glass bottom culture dish (P35G-x-14-C or P50G-x-14-F).

2. After 15 minutes, decant the HCl and rinse the dish 3x with phosphate buffered saline (PBS) and 2x with ultrapure H2O.

3. Apply your coating to the dishes.

4. Add a similar volume of the medium in which you will plate your cells to pre-equilibrate the glass surface. Incubate the medium in glass bottom dishes for 15 mins at 37 C. Remove the medium and then plate your cells.

To try a sample of non-coated glass bottom dishes, go to our free sample page.

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A-DU5

Can the coverslip be removed from the glass bottom dish?

Yes. However, for most applications, cells growing in the glass bottom dish can be viewed without removal of the coverslip.

If necessary (e.g. for long term storage purposes), the coverslip can be removed using the following procedure:

1. Order Part # PDCF OS 30 (Fluid for removal of coverslips from glass bottom dishes) 2. Invert the cover of the dish.
3. Pipette 1.0 ml of fluid into the inverted cover.
4. Place the bottom of the dish in the cover. Make sure that the liquid is touching the bottom of the coverslip.
5. Allow the dish to sit in the fluid for 45 minutes at room temperature.
6. Dry the bottom of the coverslip with an absorbent paper towel.
7. Place the dish on a clean surface. Using forceps, press down on the edge of the coverslip to separate the coverslip from the dish.

Note: If the above procedure is followed, the PDCF OS 30 fluid will not contact the cells and will not disrupt cells on the coverslip or the staining thereof.

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A-DU6

How can I control the temperature of the glass bottom dishes for in situ (live) microscopy?

In order to approximate physiological conditions, the temperature of the medium contained within the glass bottom dishes can be controlled by using a microscope stage heater and an appropriate stage adapter.

For use with the P35G dishes (Corning 35 mm dishes) only: Culture dish heaters (part#: DH-35), microscope stage adapters (part#: SA-microscope type), heater controller (part#: TC324-B), and connecter cable (part#: CC-28) are available from Warner Instrument Corporation. Information is available on line at: http://www.warneronline.com/products.cfm

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A-DU7

Are the glass bottom dishes good for fluorescence microscopy?

Yes. The glass bottom dishes are excellent for fluorescent microscopy. Important glass properties are:
1. Incident ultraviolet rays with wavelengths longer than 320 nm do not cause fluorescence.
2. Mercury lines at 334 and 365 nm do not create auto-fluorescence. (Note: For mercury illumination, filter out the mercury lines with wavelengths shorter than 313 nm to obtain best possible results.)
3. Refractive index (@ 20°C): nd= 1.5230 tolerance ± 0.0015
4. Abbe number V = 55.

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A-DU8

How can I use the glass bottom dishes for Nomarski Differential Interference Contrast (DIC) microscopy?

You will need to order BOTH a glass bottom dish and a glass cover. Order any P35G dish (e.g. P35G-0-14-C or P35G-0-20-C) along with a glass cover (Part#: P35GTOP-0-20-C). The glass covers can be re-used following resterilization of the covers by soaking them in 70% ethanol for 30 minutes.

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A-DU9

Why would one want to use glass bottom dishes containing gridded coverslips? What is the size of the grid?

The gridded coverslips allow one to refer to specific cells and follow them over time. For instance, individual cells can be microinjected, returned to the incubator, and observed at multiple time points since each cell can be identified with a unique alpha-numeric coordinate in the dish. Glass bottom dishes containing gridded Bellco Glass (jpg) coverslips are available. Part numbers for standard gridded dishes are: P35G-2-14-C-GRID and P50G-2-14-F-GRID.

Grid size: The grid on P35G-2-14-C-GRID and P50G-2-14-F-GRID consists of 520 unique alphanumeric squares. Each square measures 600 microns x 600 microns. The line thickness is 20 microns.

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A-DU10

Why are the 50 mm glass bottom dishes useful for microinjection and maintaining a constant atmosphere in the dish?

The 50 mm glass bottom dishes (part #'s beginning with P50G) are useful for:

a) Microinjection: The larger diameter (50 mm) and the lower side wall (7 mm) allows easier access to cells in microinjection experiments.

b) Atmosphere maintenance: The 50 mm dish has a cover that snaps onto the dish bottom and thereby prevents loss of the 5% CO2 atmosphere while the dish is out of the incubator. This can be important for experiments in which dishes will be observed for extended periods.

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A-DU11

How can I perfuse the cells growing in the glass bottom dishes?

Automate Scientific and Warner Instruments, Inc., make perfusion adapters which are compatible with MatTek's 35 mm series of glass bottom dishes (P35G-xx-xx-C).

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A-DU12

How can I use the glass bottom dishes to look at tissue slices?

The glass bottom dishes can also be used to image tissue slices. The slices are adhered to the dishes using Cell-Tak (BD BioSciences see: http://www.bdbiosciences.com/discovery_labware). A research paper utilizing MatTek's glass bottom dishes to perform confocal microscopy on brain slices is available.

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A-DU13

Can the glass bottom dishes be re-used?


We do NOT recommend re-using the glass bottom dishes. The surface properties of the substrate on which cells are cultured have a profound effect on cell structure and function. Re-use of dishes will introduce uncontrolled variables into your experiments which may affect the phenomenon under study.

MatTek glass bottom dishes are meant for single-use experiments.

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A-DU14 How do the high tolerance P35G-0.17-14-C dishes differ from the standard P35G-1.5-14-C? For what applications would the P35G-0.17-14-C be useful?

The P35G-0.17-14-C dishes utilize higher tolerance No. 1.5 thickness coverslips (coverslip thickness = 0.175 +/- 0.01 mm) versus the standard P35G-1.5-14-C dishes (coverslip thickness = 0.175 +/ 0.015 mm).

The P35G-0.17-14-C dishes will improve picture quality (see Figure below) versus the P35G-1.5-14-C dishes when using water immersion objectives, for total internal reflection microscopy (TIRF), and for other high resolution applications where resolution in the z-axis is important. Quantitative measurements using P35G-0.17-14-C dishes gave z-resolution of +/- 9.5% while z-resolution in the P35G-1.5-14-C dishes gave z-resolution of +/- 17.3% (n=5).


A A gbdishes

B gbdishcontrol

Figure: Improved Z-axis resolution - Effect of high tolerance glass coverslips (in P35G-0.17-14-C glass bottom dishes) on imaging of sub-resolution beads using:
A) P35G-0.17-14-C and B) P35G-1.5-14-C glass bottom dishes.
5 µL of FITC labeled 175nm PS-Speck sub-resolution beads were added to well of the glass bottom dishes and allowed to dry. After drying, 200 ul of water were added and the beads were imaged using a Zeiss LSM510 confocal microscope equipped with an Olympus UPLSAPO 60x (NA=1.2) water immersion objective.

 

Figures and measurements courtesy of Teemu Ihalainen, Ph. D., University of Jyvaskyla, Finland (2008).

 

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A-DP1

What is the adhesive used to attach the coverslips to the petri dishes?

Although the specific identity of the adhesive is proprietary, the adhesive used is a non-toxic silicone that has been shown to be compatible with a broad variety of cells including primary neurons and many other fastidious cells.

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A-DP2

How long can the dishes be stored?

Coated glass bottom dishes can be stored in the dark at room temperature for up to 2 years. Uncoated dishes can be stored for up to 10 years without any decline in cell growth properties.

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A-DP3

Over what temperature range can the glass bottom dishes be used?

The glass bottom dishes can be used over the temperature range
-20ºC to +50ºC. The dishes will become disfigured at 55ºC (131ºF) and therefore the dishes CANNOT be autoclaved.

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A-DP4

What are properties of the glass used in the glass bottom dishes? What are the thicknesses of the different coverslips used in the glass bottom dishes?

MatTek uses the highest quality, borosilicate German glass coverslips in its glass bottom dishes. The coverslip properties are as follows:

1. Highest hydrolytic resistance (hydrolytic class 1).
2. Excellent resistance to chemicals.
3. Emission of alkali approximately 15 to 24 µg Na2O/g glass.
4. Excellent properties for fluorescent microscopy.
5. Incident ultraviolet rays with wavelengths longer than 320 nm do not cause fluorescence.
6. Mercury lines at 334 and 365 nm do not create auto-fluorescence.
(Note: For mercury illumination, filter out the mercury lines with wavelengths shorter than 313 nm
to obtain best possible results.)
7. Refractive index (@ 20°C): nD ** = 1.5230 tolerance ± 0.0015.
8. Abbe number V = 55.

The thickness of the glass coverslips depends on the Coverslip No., as follows:

Coverslip No.Thickness (mm)
00.085-0.13
1.00.13-0.16
1.50.16-0.19
2.00.19-0.23
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A-DP5

How deep is the well of the glass bottom dish?

The depth of the wells in the glass bottom dishes depends on the type of dish as follows:

1. Corning 35 mm: 0.70 - 0.75 mm
2. Falcon 50 mm: 1.00 - 1.10 mm
3. Falcon 35 mm: 1.15 - 1.25 mm*
4. Nunc 35 mm: 0.80 - 0.85 mm*
5. Falcon 6-well plate: 1.45-1.55 mm
6. Falcon 12-well plate: 1.45-1.55 mm
7. Falcon 24-well plate: 1.10-1.20 mm
8. Falcon 96-well plate: 1.05-1.25 mm

*Glass bottom dishes made from dish types 3 and 4 are special order items.

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A-DP6

What is the chemical compatibility of Glass Bottom Dishes and Multi-Well Plates? Can they be used with organic solvents?

The body of the glass bottom dishes and multi-well plates is made from polystyrene. Therefore, they have limited compatibility with organic solvents. Please see the chemical compatibility table.

Solvent Chemical Compatibility
Acetone Poor
Ammonium hydroxide (1N) Fair
Ammonium hydroxide (25%) Fair
Aniline Good
Butanol Good
Chloroform Poor
Dimethylformamide Poor
Dimethylsulfoxide(DMSO) Poor
DMSO/H2O (20/80) Good
Dioxane Poor
Ethanol Good
Hexane Poor
Hydrochloric acid (25%) Good
Hydrochloric acid (concentrated) Fair
Methanol Good
Methyl ethyl diketone Poor
Methylene chloride Poor
Nitric acid (25%) Poor
Nitric acid (concentrated) Poor
Sodium hydroxide Good
Toluene Poor
Xylene Poor
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A-DP7

How do I know that the glass bottom dishes are sterile?


All glass bottom dishes are gamma irradiated at an FDA approved and certified vendor. We sterilize our dishes in bulk and typically >2000 separate cases are sterilized at the same time. Since sterility is an absolute requirement for all of our customers, the gamma dose that we use is excessive in order to ensure sterility.

Following sterilization, dishes are subjected to our quality control analysis to verify sterility: they are incubated in antibiotic- and anti-fungal-free medium for 7 days. In addition, each box has a gamma irradiation indicator which turns red upon exposure to gamma rays.

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A-DC1

What is the molecular weight range of the poly-d-lysine used to coat the PDL coated glass bottom dishes?

The poly-d-lysine used to coat the P35GC-x-xx-C or P50GC-x-xx-F glass bottom dishes is in the molecular weight range of 70,000-150,000 Daltons.

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A-DC2

Why are the dishes coated with poly-d-lysine (instead of poly-l-lysine)?

Both untreated glass and cells are negatively charged. Poly-lysine is applied to the glass surface to make it positively charged, thereby increasing electrostatic attraction between the glass surface and the cells and thus improving cell attachment. Poly-d-lysine is favored because the d-enantiomer is less prone to protease-mediated breakdown than the naturally-occurring l-enantiomer. Otherwise, Poly-d-Lysine and Poly-l-Lysine are equivalent.

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A-DC3

What type of collagen is applied to the collagen coated glass bottom dishes (part #: P35GCol-x-xx-C or P50GCol-x-xx-F)?

The collagen used to coat the P35GCol-x-xx-C or P50GCol-x-xx-F glass bottom dishes is type 1 rat tail collagen.

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A-DC4

Are the poly-lysine or collagen coatings going to affect the optical properties of the glass bottom dishes?

The coatings are monolayer coatings which do not affect the optical properties of the glass bottom dishes.

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A-SO1

Other than the standard 10mm and 14mm hole sizes, do the glass bottom dishes come with any alternative hole diameters?

Glass bottom dishes with 20-mm and 7-mm diameter glass surfaces are also standard products (e.g. Part # P35G-1.5-20-C or P35G-0-7-C). In addition, 50-mm dishes with 30-mm diameter glass surfaces (e.g. Part #P50G-1.5-30-F or P50G-0-30-F) are standard products; these dishes maximize the surface area for cell growth. When very expensive reagents need to be conserved, dishes with a 5-mm diameter glass surface are also available on a special order basis. Note: The 30-mm hole is available in the 50-mm dish only

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